Chromosome 13

Genes Linked with Cancer (46)

How to use this data table Click on the gene name for detailed information. Type in the Search box e.g. 'germline' or 'Breast Cancer' to search within Chromosome 13; or Sort by clicking on a column heading e.g. 'Gene'.

Gene Location Aliases Abnormalities Implicated in
LATS2 13q12.11 KPM-Lung Cancer
-Mesothelioma
GJB2 13q12.11 HID, KID, PPK, CX26, DFNA3, DFNB1, NSRD1, DFNA3A, DFNB1A-Breast Cancer
-Colorectal Cancer
-Esophageal Cancer
-Liver Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Skin Cancer
ZMYM2 13q12.11 FIM, MYM, RAMP, SCLL, ZNF198Somatic
FGF9 13q12.11 GAF, FGF-9, SYNS3, HBFG-9, HBGF-9-Bone Cancer (primary)
-Colorectal Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Ovarian Cancer
IFT88 13q12.11 DAF19, TG737, TTC10, hTg737, D13S1056E-Liver Cancer
SACS 13q12.12 SPAX6, ARSACS, DNAJC29, PPP1R138-Colorectal Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Small Cell Lung Cancer
-Ovarian Cancer
-Stomach Cancer
FLT3 13q12.2 FLK2, STK1, CD135, FLK-2Somatic-Acute Myeloid Leukaemia
-Leukaemia
CDX2 13q12.2 CDX3, CDX-3, CDX2/ASSomatic-Acute Myeloid Leukaemia
-Cervical Cancer
-Colorectal Cancer
-Eye Cancer
-Pancreatic Cancer
-Paranasal Sinus and Nasal Cavity Cancer
PDX1 13q12.2 GSF, IPF1, IUF1, IDX-1, MODY4, PDX-1, STF-1, PAGEN1-Pancreatic Cancer
-Stomach Cancer
HMGB1 13q12.3 HMG1, HMG3, HMG-1, SBP-1-Breast Cancer
-Colorectal Cancer
-Eye Cancer
-Liver Cancer
-Lung Cancer
-Osteosarcoma
-Prostate Cancer
-Stomach Cancer
FLT1 13q12.3 FLT, FLT-1, VEGFR1, VEGFR-1-Bladder Cancer
-Breast Cancer
-Colorectal Cancer
KL 13q13.1 -Breast Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Multiple Myeloma
-Ovarian Cancer
-Pancreatic Cancer
BRCA2 13q13.1 FAD, FACD, FAD1, GLM3, BRCC2, FANCD, PNCA2, FANCD1, XRCC11, BROVCA2Germline & Somatic-Breast Cancer
-Breast Cancer, Familial
-Cancer Screening
-Fallopian tube cancer
-Fanconi Anaemia
-Hereditary Breast and Ovarian Cancer Syndrome
-Intraocular (Eye) Melanoma
-Male Breast Cancer
-Melanoma
-Ovarian Cancer
-Pancreatic Cancer
-Prostate Cancer
STARD13 13q13.1-q13.2 DLC2, GT650, ARHGAP37, LINC00464-Astrocytoma, Childhood
-Brain Tumours, Childhood
-Liver Cancer
POSTN 13q13.3 PN, OSF2, OSF-2, PDLPOSTN-Breast Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Melanoma
-Ovarian Cancer
CCNA1 13q13.3 CT146-Bladder Cancer
-Breast Cancer
-Cervical Cancer
-Head and Neck Cancers
-Lung Cancer
-Skin Cancer
LHFP 13q13.3-q14.11 Somatic
TNFSF11 13q14.11 ODF, OPGL, sOdf, CD254, OPTB2, RANKL, TNLG6B, TRANCE, hRANKL2-Bone Cancer (primary)
-Breast Cancer
-Lung Cancer
-Multiple Myeloma
-Osteosarcoma
-Prostate Cancer
TSC22D1 13q14.11 Ptg-2, TSC22, TGFB1I4-Cervical Cancer
-Prostate Cancer
-Salivary Gland Cancer
FOXO1 13q14.11 FKH1, FKHR, FOXO1ASomatic
Translocation
-Breast Cancer
-Rhabdomyosarcoma
-Skin Cancer
-Thyroid Cancer
-Urinary System Cancers
-Vaginal Cancer
LCP1 13q14.13 LPL, CP64, PLS2, LC64P, HEL-S-37, L-PLASTINSomatic
TPT1 13q14.13 HRF, p02, p23, TCTP
TRIM13 13q14.2 CAR, LEU5, RFP2, DLEU5, RNF77-Chronic Lymphocytic Leukemia
-Multiple Myeloma
RB1 13q14.2 RB, pRb, OSRC, pp110, p105-Rb, PPP1R130Germline & Somatic-Acute Lymphocytic Leukaemia (ALL)
-Adrenocortical Cancer
-Bladder Cancer
-Breast Cancer
-Esophageal Cancer
-Lung Cancer
-Osteosarcoma
-Retinoblastoma
DLEU2 13q14.2 1B4, DLB2, LEU2, BCMSUN, RFP2OS, MIR15AHG, TRIM13OS, LINC00022, NCRNA00022-Acute Myeloid Leukaemia
-Chronic Lymphocytic Leukemia
ARL11 13q14.2 ARLTS1-Breast Cancer
-Chronic Lymphocytic Leukemia
-Colorectal Cancer
-Lung Cancer
-Melanoma
-Ovarian Cancer
-Pancreatic Cancer
-Prostate Cancer
OLFM4 13q14.3 GC1, OLM4, OlfD, GW112, hGC-1, hOLfD, UNQ362, bA209J19.1-Colorectal Cancer
-Pancreatic Cancer
-Stomach Cancer
-Vulvar Cancer
ATP7B 13q14.3 WD, PWD, WC1, WND-Bladder Cancer
-Breast Cancer
-Liver Cancer
-Ovarian Cancer
MIR1297 13q14.3 MIRN1297, mir-1297, hsa-mir-1297-Colorectal Cancer
-Germ Cell Tumours
-Kaposi Sarcoma
-Laryngeal Cancer
-Liver Cancer
-Lung Cancer
-Prostate Cancer
-Skin Cancer
DACH1 13q21.33 DACH-Breast Cancer
-Leukaemia
-Lung Cancer
KLF5 13q22.1 CKLF, IKLF, BTEB2-Acute Myeloid Leukaemia
-Bladder Cancer
-Breast Cancer
-Colorectal Cancer
-Lung Cancer
-Prostate Cancer
-Uterine Sarcoma
EDNRB 13q22.3 ETB, ET-B, ETB1, ETBR, ETRB, HSCR, WS4A, ABCDS, ET-BR, HSCR2-Bladder Cancer
-Head and Neck Cancers
-Melanoma
-Oral Cavity Cancer
-Prostate Cancer
-Skin Cancer
-Stomach Cancer
-Urinary System Cancers
SPRY2 13q31.1 IGAN3, hSPRY2-Colorectal Cancer
-Liver Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Prostate Cancer
-Thyroid Cancer
RAP2A 13q32.1 KREV, RAP2, K-REV, RbBP-30-Brain Tumours, Childhood
-Colorectal Cancer
-Prostate Cancer
ABCC4 13q32.1 MRP4, MOATB, MOAT-B-Acute Lymphocytic Leukaemia (ALL)
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Pancreatic Cancer
-Skin Cancer
-Stomach Cancer
ERCC5 13q33.1 XPG, UVDR, XPGC, COFS3, ERCM2, ERCC5-201Germline-Breast Cancer
-Colorectal Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Stomach Cancer
-Uterine Sarcoma
LIG4 13q33.3 LIG4S-Brain Tumours, Childhood
-Breast Cancer
-Cervical Cancer
-Colorectal Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Ovarian Cancer
-Prostate Cancer
-Thyroid Cancer
TNFSF13B 13q33.3 DTL, BAFF, BLYS, CD257, TALL1, THANK, ZTNF4, TALL-1, TNLG7A, TNFSF20-Chronic Lymphocytic Leukemia
-Multiple Myeloma
EFNB2 13q33.3 HTKL, EPLG5, Htk-L, LERK5-Breast Cancer
-Melanoma
-Neuroblastoma
CUL4A 13q34 -Breast Cancer
-Lung Cancer
-Prostate Cancer
-Skin Cancer
GAS6 13q34 AXSF, AXLLG-Acute Myeloid Leukaemia
-Breast Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Ovarian Cancer
-Prostate Cancer
LAMP1 13q34 LAMPA, CD107a, LGP120-Acute Myeloid Leukaemia
-Breast Cancer
-Cervical Cancer
-Chronic Lymphocytic Leukemia
-Ovarian Cancer
IRS2 13q34 IRS-2-Breast Cancer
-Colorectal Cancer
-Prostate Cancer
SOX1 13q34 -Cervical Cancer
-Liver Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Testicular Cancer
COL4A2 13q34 ICH, POREN2-Brain Tumours, Childhood
-Breast Cancer
-Eye Cancer
-Uterine Sarcoma
ING1 13q34 p33, p47, p33ING1, p24ING1c, p33ING1b, p47ING1a-Liver Cancer
-Lung Cancer
-Stomach Cancer

Structural Abnormalities

Selected list of common recurrent structural abnormalities - Chromosome 13:

Abnormality Type Gene(s)
del(13q) in Head and Neck CancersDeletion
Loss of Chromosome 13 in MyelomaDeletion
t(1;13)(p36;q14) in RhabdomyosarcomaTranslocationFOXO1 (13q14.11)PAX7 (1p36.13)
t(2;13)(q35;q14) in RhabdomyosarcomaTranslocationFOXO1 (13q14.11)PAX3 (2q35)

This is a highly selective list aiming to capture structural abnormalies which are frequesnt and/or significant in relation to diagnosis, prognosis, and/or characterising specific cancers. For a much more extensive list see the Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer.

Further Resources (3 links)

Disclaimer: This site is for educational purposes only; it can not be used in diagnosis or treatment.

Cite this page: Cotterill SJ. Chromosome 13, Cancer Genetics Web: http://www.cancer-genetics.org/clinkc13.htm Accessed:

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