Chromosome 9

Genes Linked with Cancer (82)

How to use this data table Click on the gene name for detailed information. Type in the Search box e.g. 'germline' or 'Breast Cancer' to search within Chromosome 9; or Sort by clicking on a column heading e.g. 'Gene'.

Gene Location Aliases Abnormalities Implicated in
PAX5 9p13.2 ALL3, BSAPGermline & Somatic
Translocation
-Acute Lymphocytic Leukemia (ALL), child
-Lymphoma
MELK 9p13.2 HPK38-Brain Stem Glioma, Childhood
-Brain Tumours, Childhood
-Breast Cancer
CA9 9p13.3 MN, CAIX-Cervical Cancer
-Kidney Cancer
-Oral Cavity Cancer
-Thyroid Cancer
-von Hippel-Lindau Disease
-Vulvar Cancer
CCL19 9p13.3 ELC, CKb11, MIP3B, MIP-3b, SCYA19-Breast Cancer
-Chronic Lymphocytic Leukemia
-Colorectal Cancer
-Head and Neck Cancers
-Liver Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Ovarian Cancer
-Skin Cancer
BAG1 9p13.3 HAP, BAG-1, RAP46OverexpressionMany cancer types including:
-Breast Cancer
-Colorectal Cancer
-Endometrial Cancer
-Prostate Cancer
-Apoptosis
FANCG 9p13.3 FAG, XRCC9Germline-Fanconi Anaemia
RECK 9p13.3 ST15-Breast Cancer
-Cervical Cancer
-Liver Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Prostate Cancer
GALT 9p13.3 -Breast Cancer
-Ovarian Cancer
CCL21 9p13.3 ECL, SLC, CKb9, TCA4, 6Ckine, SCYA21-Breast Cancer
-Colorectal Cancer
-Lung Cancer
-Skin Cancer
AQP3 9p13.3 GIL, AQP-3-Bladder Cancer
-Breast Cancer
-Cervical Cancer
-Esophageal Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Melanoma
-Skin Cancer
-Stomach Cancer
MTAP 9p21.3 BDMF, MSAP, DMSFH, LGMBF, DMSMFH, c86fus, HEL-249-Acute Lymphocytic Leukaemia (ALL)
-Brain Tumours, Childhood
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Melanoma
MLLT3 9p21.3 AF9, YEATS3Somatic
Translocation
-Acute Lymphocytic Leukaemia (ALL)
-Acute Myeloid Leukaemia
-Leukaemia
IFNA7 9p21.3 IFNA-J, IFN-alphaJ-Acute Lymphocytic Leukaemia (ALL)
-Chronic Myelogenous Leukemia
-Colorectal Cancer
-Kidney Cancer
-Liver Cancer
-Multiple Myeloma
IFNA2 9p21.3 IFNA, INFA2, IFNA2B, IFN-alphaA-Acute Lymphocytic Leukaemia (ALL)
-Brain Stem Glioma, Childhood
-Chronic Myelogenous Leukemia
-Kidney Cancer
-Leukaemia
-Liver Cancer
-Multiple Myeloma
CDKN2B 9p21.3 P15, MTS2, TP15, CDK4I, INK4B, p15INK4b-Acute Lymphocytic Leukaemia (ALL)
-Bladder Cancer
-Brain Tumours, Childhood
-Skin Cancer
CDKN2A 9p21.3 ARF, MLM, P14, P16, P19, CMM2, INK4, MTS1, TP16, CDK4I, CDKN2, INK4A, MTS-1, P14ARF, P19ARF, P16INK4, P16INK4A, P16-INK4AGermline & Somatic
Deletion
-Adrenocortical Cancer
-Bladder Cancer
-Breast Cancer
-Colorectal Cancer
-Ewing's Sarcoma
-Head and Neck Cancers
-Hodgkin Lymphoma
-Lung Cancer
-Melanoma
-Familial Melanoma
-Mesothelioma
-Neurofibromatosis
-Osteosarcoma
-Pancreatic Cancer
-Familial Pancreatic Cancer
-Rhabdomyosarcoma
-Wilms Tumour
CDKN2B-AS1 9p21.3 ANRIL, p15AS, PCAT12, CDKN2BAS, CDKN2B-AS, NCRNA00089Germline
IFNA17 9p21.3 IFNA, INFA, LEIF2C1, IFN-alphaI-Acute Lymphocytic Leukaemia (ALL)
-Cervical Cancer
-Chronic Myelogenous Leukemia
-Kidney Cancer
-Leukaemia
-Liver Cancer
-Multiple Myeloma
-Nasopharyngeal Cancer
RPS6 9p22.1 S6-Astrocytoma, Childhood
-Liver Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Oral Cavity Cancer
-Pancreatic Cancer
PSIP1 9p22.3 p52, p75, PAIP, DFS70, LEDGF, PSIP2Somatic-Acute Myeloid Leukaemia
-Bladder Cancer
-Leukaemia
-Ovarian Cancer
TYRP1 9p23 TRP, CAS2, CATB, GP75, OCA3, TRP1, TYRP, b-PROTEIN-Eye Cancer
-Melanoma
-Skin Cancer
NFIB 9p23-p22.3 CTF, NF1-B, NFI-B, NFIB2, NFIB3, NF-I/B, NFI-RED, HMGIC/NFIBSomatic-Adenoid Cystic Carcinoma
-Breast Cancer
-Head and Neck Cancers
-Small Cell Lung Cancer
-Prostate Cancer
-Salivary Gland Cancer
-Skin Cancer
JAK2 9p24.1 JTK10, THCYT3Somatic-Acute Lymphocytic Leukaemia (ALL)
-Leukaemia
-Myeloproliferative Disorders
-Skin Cancer
-Stomach Cancer
PDCD1LG2 9p24.1 B7DC, Btdc, PDL2, CD273, PD-L2, PDCD1L2, bA574F11.2Somatic-Acute Myeloid Leukaemia
-Chronic Myelogenous Leukemia
-Hodgkin Lymphoma
-Lung Cancer
-Stomach Cancer
-Vulvar Cancer
MLANA 9p24.1 MART1, MART-1-Kaposi Sarcoma
-Melanoma
CD274 9p24.1 B7-H, B7H1, PDL1, PD-L1, PDCD1L1, PDCD1LG1Somatic-Hodgkin Lymphoma
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Melanoma
-Stomach Cancer
PTPRD 9p24.1-p23 HPTP, PTPD, HPTPD, HPTPDELTA, RPTPDELTA-Bladder Cancer
-Lung Cancer
-Melanoma
-Soft Tissue Sarcoma
-Vulvar Cancer
KDM4C 9p24.1 GASC1, JHDM3C, JMJD2C, TDRD14C-Acute Myeloid Leukaemia
-Breast Cancer
-Esophageal Cancer
-Osteosarcoma
-Prostate Cancer
SMARCA2 9p24.3 BRM, SNF2, SWI2, hBRM, NCBRS, Sth1p, BAF190, SNF2L2, SNF2LA, hSNF2a-Bladder Cancer
-Breast Cancer
-Cervical Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Melanoma
ANXA1 9q21.13 ANX1, LPC1-Bladder Cancer
-Breast Cancer
-Stomach Cancer
ALDH1A1 9q21.13 ALDC, ALDH1, HEL-9, HEL12, PUMB1, ALDH11, RALDH1, ALDH-E1, HEL-S-53e-Breast Cancer
-Lung Cancer
GNAQ 9q21.2 GAQ, SWS, CMC1, G-ALPHA-qSomatic-Eye Cancer
-Melanoma
PCA3 9q21.2 DD3, PCAT3, NCRNA00019-Cancer Screening
-Prostate Cancer
TLE1 9q21.32 ESG, ESG1, GRG1-Acute Myeloid Leukaemia
-Breast Cancer
-Cervical Cancer
-Lung Cancer
-Soft Tissue Sarcoma
-Synovial Sarcoma
RMI1 9q21.32 BLAP75, FAAP75, C9orf76-Acute Myeloid Leukaemia
-Bloom Syndrome
-Bone Cancer (primary)
-Osteosarcoma
-Prostate Cancer
-Skin Cancer
GAS1 9q21.33 -Brain Stem Glioma, Childhood
-Prostate Cancer
-Uterine Sarcoma
CTSL 9q21.33 MEP, CATL, CTSL1-Breast Cancer
-Cervical Cancer
-Esophageal Cancer
-Lung Cancer
-Melanoma
-Osteosarcoma
-Ovarian Cancer
-Thyroid Cancer
NTRK2 9q21.33 TRKB, trk-B, GP145-TrkB-Cervical Cancer
-Neuroblastoma
-Oral Cavity Cancer
-Wilms Tumour
DAPK1 9q21.33 DAPK-Bladder Cancer
-Breast Cancer
-Cervical Cancer
-Chronic Lymphocytic Leukemia
-Paranasal Sinus and Nasal Cavity Cancer
-Prostate Cancer
-Skin Cancer
-Soft Tissue Sarcoma
-Stomach Cancer
-Thyroid Cancer
-Urinary System Cancers
-Uterine Sarcoma
SYK 9q22.2 p72-SykSomatic-Breast Cancer
-Chronic Lymphocytic Leukemia
CKS2 9q22.2 CKSHS2-Bladder Cancer
-Breast Cancer
-Cervical Cancer
-Colorectal Cancer
-Esophageal Cancer
-Liver Cancer
-Prostate Cancer
OMD 9q22.31 OSAD, SLRR2CSomatic-Breast Cancer
-Esophageal Cancer
ROR2 9q22.31 BDB, BDB1, NTRKR2-Chronic Lymphocytic Leukemia
-Kidney Cancer
-Lung Cancer
-Stomach Cancer
PTCH1 9q22.32 PTC, BCNS, HPE7, PTC1, PTCH, NBCCS, PTCH11Germline & Somatic-Basal Cell Nevus Syndrome
-Cervical Cancer
-Medulloblastoma
-Basal Cell Carcinoma (BCC) - Skin
-Stomach Cancer
MIRLET7D 9q22.32 LET7D, let-7d, MIRNLET7D, hsa-let-7d-Bladder Cancer
-Breast Cancer
-Lung Cancer
-Small Cell Lung Cancer
-Ovarian Cancer
-Pancreatic Cancer
-Prostate Cancer
-Skin Cancer
-Uterine Sarcoma
FANCC 9q22.32 FA3, FAC, FACCGermline-Fanconi Anaemia
FOXE1 9q22.33 TTF2, FOXE2, HFKH4, HFKL5, NMTC4, TITF2, TTF-2, FKHL15-Pancreatic Cancer
-Skin Cancer
TGFBR1 9q22.33 AAT5, ALK5, ESS1, LDS1, MSSE, SKR4, ALK-5, LDS1A, LDS2A, TGFR-1, ACVRLK4, tbetaR-I-Bladder Cancer
-Breast Cancer
-Colorectal Cancer
-Pancreatic Cancer
-Skin Cancer
XPA 9q22.33 XP1, XPACGermline-Lung Cancer
-Lung Cancer, Non-Small Cell
-Skin Cancer
NR4A3 9q31.1 CHN, TEC, CSMF, NOR1, MINORSomatic
Translocation
-Bone Cancer (primary)
-Cervical Cancer
-Chondrosarcoma
-Soft Tissue Sarcoma
ABCA1 9q31.1 TGD, ABC1, CERP, ABC-1, HDLDT1-Breast Cancer
-Liver Cancer
-Prostate Cancer
TAL2 9q31.2 Somatic-Ovarian Cancer
KLF4 9q31.2 EZF, GKLF-Bladder Cancer
-Breast Cancer
-Colorectal Cancer
-Prostate Cancer
-Stomach Cancer
-Uterine Sarcoma
RAD23B 9q31.2 P58, HR23B, HHR23B-Bladder Cancer
-Breast Cancer
-Liver Cancer
-Lung Cancer
-Prostate Cancer
TNFSF15 9q32 TL1, TL1A, VEGI, TNLG1B, VEGI192A-Bladder Cancer
-Breast Cancer
-Kidney Cancer
TLR4 9q33.1 TOLL, CD284, TLR-4, ARMD10-Breast Cancer
-Colorectal Cancer
-Prostate Cancer
-Stomach Cancer
DEC1 9q33.1 CTS9-Breast Cancer
-Esophageal Cancer
-Liver Cancer
-Lung Cancer
-Oral Cavity Cancer
-Pancreatic Cancer
PAPPA 9q33.1 PAPA, DIPLA1, PAPP-A, PAPPA1, ASBABP2, IGFBP-4ase-Acute Myeloid Leukaemia
-Breast Cancer
-Cervical Cancer
-Chronic Lymphocytic Leukemia
-Endometrial Cancer
-Gynecologic Cancers
-Haematological Malignancies
-Myelodysplastic Syndromes
-Ovarian Cancer
-Vulvar Cancer
BRINP1 9q33.1 DBC1, FAM5A, DBCCR1-Liver Cancer
-Stomach Cancer
TRAF1 9q33.2 EBI6, MGC:10353-Breast Cancer
CNTRL 9q33.2 FAN, CEP1, CEP110, bA165P4.1Somatic-Acute Myeloid Leukaemia
-Brain and CNS Tumours
-Breast Cancer
-Myeloproliferative Disorders
DAB2IP 9q33.2 AIP1, AIP-1, AF9Q34, DIP1/2-Bladder Cancer
-Breast Cancer
-Lung Cancer
-Prostate Cancer
PTGS1 9q33.2 COX1, COX3, PHS1, PCOX1, PES-1, PGHS1, PTGHS, PGG/HS, PGHS-1-Breast Cancer
-Colorectal Cancer
-Thyroid Cancer
PBX3 9q33.3 -Acute Lymphocytic Leukaemia (ALL)
-Acute Myeloid Leukaemia
-Leukaemia
NR5A1 9q33.3 ELP, SF1, FTZ1, POF7, SF-1, AD4BP, FTZF1, SPGF8, SRXY3, hSF-1-Adrenocortical Cancer
-Ovarian Cancer
-Testicular Cancer
FPGS 9q34.11 -Acute Lymphocytic Leukaemia (ALL)
-Colorectal Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
CDK9 9q34.11 TAK, C-2k, CTK1, CDC2L4, PITALRE-Breast Cancer
-Cervical Cancer
-Lung Cancer
-Neuroblastoma
FNBP1 9q34.11 FBP17Somatic-Esophageal Cancer
LCN2 9q34.11 p25, 24p3, MSFI, NGAL-Breast Cancer
-Esophageal Cancer
-Liver Cancer
-Lung Cancer
-Pancreatic Cancer
-Prostate Cancer
SET 9q34.11 2PP2A, IGAAD, TAF-I, I2PP2A, IPP2A2, PHAPII, TAF-IBETASomatic
Translocation
-Acute Myeloid Leukaemia
-Wilms Tumour
ABL1 9q34.12 ABL, JTK7, p150, c-ABL, v-abl, c-ABL1, bcr/ablSomatic
Translocation
-Acute Lymphocytic Leukaemia (ALL)
-Chronic Myelogenous Leukemia
NUP214 9q34.13 CAN, CAINSomatic
Translocation
-Acute Lymphocytic Leukaemia (ALL)
-Acute Myeloid Leukaemia
RALGDS 9q34.13-q34.2 RGF, RGDS, RalGEFSomatic-Breast Cancer
-Cervical Cancer
-Colorectal Cancer
-Liver Cancer
-Lung Cancer
-Pancreatic Cancer
TSC1 9q34.13 LAM, TSCGermline-Brain Tumours, Childhood
-Kidney Cancer
-Lung Cancer
RAPGEF1 9q34.13 C3G, GRF2
TTF1 9q34.13 TTF-1, TTF-I-Lung Cancer
-Lung Cancer, Non-Small Cell
-Small Cell Lung Cancer
-Paranasal Sinus and Nasal Cavity Cancer
-Thyroid Cancer
RXRA 9q34.2 NR2B1-Bladder Cancer
-Liver Cancer
-Prostate Cancer
-Retinoblastoma
BRD3 9q34.2 ORFX, RING3LSomatic-Acute Myeloid Leukaemia
-Breast Cancer
-Lung Cancer
TRAF2 9q34.3 TRAP, TRAP3, MGC:45012-Breast Cancer
NOTCH1 9q34.3 hN1, AOS5, TAN1, AOVD1Somatic
Translocation
-Acute Lymphocytic Leukaemia (ALL)
-Acute Lymphocytic Leukemia (ALL), child
-Breast Cancer
-Childhood Cancers
-Chronic Lymphocytic Leukemia
-Esophageal Cancer
-Head and Neck Cancers
-Thyroid Cancer
PAEP 9q34.3 GD, GdA, GdF, GdS, PEP, PAEG, PP14-Breast Cancer
-Endometrial Cancer
-Melanoma
-Ovarian Cancer
MIR126 9q34.3 MIRN126, mir-126, miRNA126-Acute Lymphocytic Leukaemia (ALL)
-Breast Cancer
-Cervical Cancer
-Colorectal Cancer
-Lung Cancer
-Lung Cancer, Non-Small Cell
-Pancreatic Cancer
-Prostate Cancer
-Skin Cancer

Structural Abnormalities

Selected list of common recurrent structural abnormalities - Chromosome 9:

This is a highly selective list aiming to capture structural abnormalies which are frequesnt and/or significant in relation to diagnosis, prognosis, and/or characterising specific cancers. For a much more extensive list see the Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer.

Further Resources (3 links)

Disclaimer: This site is for educational purposes only; it can not be used in diagnosis or treatment.

Cite this page: Cotterill SJ. Chromosome 9, Cancer Genetics Web: http://www.cancer-genetics.org/clinkc09.htm Accessed:

 [Home]    Page last revised: 22 August, 2019     © Copyright 1999-